IMPi: An interactive homology modeling pipeline

Abstract

Summary: The development of automated servers to predict the three-dimensional structure of proteins has seen much progress over the years. These servers make modeling simpler, but largely exclude users from the process. We present an Interactive Modeling Pipeline (IMPi) for homology modeling. The pipeline simplifies the modeling process and reduces the workload required by the user, while still allowing engagement from the user during every step. Default parameters are given for each step, which can either be modified or supplemented with additional external input. As such, it has been designed for users of varying levels of experience with homology modeling. Availability and implementation: The IMPi site is free for non-commercial use and can be accessed at https://impi.rubi.ru.ac.za. Supplementary information: Documentation available at https://impi.rubi.ru.ac.za/#documentation.