Derivative Computations and Robust Standard Errors for Linear Mixed Effects Models in lme4

Abstract

While robust standard errors and related facilities are available in R for many types of statistical models, the facilities are notably lacking for models estimated via lme4. This is because the necessary statistical output, including the Hessian and casewise gradient of random effect parameters, is not immediately available from lme4 and is not trivial to obtain. In this article, we supply and describe two new functions to obtain this output from Gaussian mixed models: estfun.lmerMod() and vcov.full.lmerMod(). We discuss the theoretical results implemented in the code, focusing on calculation of robust standard errors via package sandwich. We also use the Sleepstudy data to illustrate the code and compare it to a benchmark from package lavaan.