Volume tensor of pheasant brain compartments estimated by Fakir probe

Abstract

The volume tensor provides robust estimate of object shape and orientation in space. The tensor is estimated from 3D data set by the Fakir probe, an interactive method using intersections of the objects boundary with a virtual lines. The method thus can be applied to objects that cannot be segmented automatically. Marking the intersections instead of segmenting the whole object reduces the workload required for obtaining sufficiently precise results. We present theoretical results on the variance of estimate of integrals by systematic sampling that enable calculation of the shape estimate precision. To demonstrate the ability of Fakir technique, we measure the changes in shape and orientation of pheasant brain compartments during development.