Degeneracy of Two-Dimensional Zero-One Reaction Networks with Up to Three Species

Abstract

Zero-one biochemical reaction networks are widely recognized for their importance in analyzing signal transduction and cellular decision-making processes. Degenerate networks reveal non-standard behaviors and mark the boundary where classical methods fail. Their analysis is key to understanding exceptional dynamical phenomena in biochemical systems. Therefore, we focus on investigating the degeneracy of zero-one reaction networks. It is known that one-dimensional zero-one networks cannot degenerate. In this work, we identify all degenerate two-dimensional zero-one reaction networks with up to three species by an efficient algorithm. By analyzing the structure of these networks, we arrive at the following conclusion: if a two-dimensional zero-one reaction network with three species is degenerate, then its steady-state system is equivalent to a binomial system.