Pattern Formation in Bioconvection of Thiovulum in a Hele-Shaw Chamber

Abstract

This paper is associated with a video winner of a 2025 American Physical Society's Division of Fluid Dynamics (DFD) Gallery of Fluid Motion Award for work presented at the DFD Gallery of Fluid Motion. The original video is available online at the Gallery of Fluid Motion, https://doi.org/10.1103/APS.DFD.2025.GFM.V045. We investigate bioconvection in a colony of Thiovulum sp. ST bacteria, a recently isolated enrichment culture, confined within a Hele-Shaw chamber. Driven by chemotactic and gravitactic responses, the cells collectively develop striking emergent patterns and convection-like dynamics. Starting from a dense, homogeneous suspension, the swimming bacteria generate large-scale bioconvective flows within minutes. Although these flows resemble thermal convection, they arise in the absence of an imposed temperature gradient. Instead, they arise from the collective swimming of bacteria responding to oxygen gradients and gravity.