Cell-Probe Lower Bounds and Complexity-Preserving Reductions for Suffix Array Queries

Abstract

For a text $T$ of length $n$ over an alphabet of size $σ$, its suffix array lists the starting positions of the suffixes of $T$ in lexicographic order, and its inverse suffix array gives the lexicographic rank of the suffix starting at each position. Since the introduction of the FM-index and the compressed suffix array in 2000, both queries have been supported in $O((\log_σn)^ε)$ time using $O(n\logσ)$ bits, for any constant $ε>0$. Yet no nontrivial time-space lower bound for suffix-array queries was known. We give the first such lower bound. Specifically, we show that, in the cell-probe model with $Θ(\log n)$-bit words, every $S$-bit data structure answering suffix-array queries on binary strings of length at most $n$ has query time $Ω(\log\log n/\log((S/n)\log\log n))$. Consequently, every structure using $O(n(\log\log n)^{O(1)})$ bits requires $Ω(\log\log n/\log\log\log n)$ query time, while constant query time requires $Ω(n\log^εn)$ bits for some constant $ε>0$. In particular, no $O(n)$-bit suffix-array representation for binary texts supports constant-time queries, answering the 25-year-old question of Grossi and Vitter. We also give exact complexity-preserving equivalences between suffix-array access and simpler prefix queries on short strings. For every $2\leqσ\leq n$, suffix-array queries are equivalent to prefix-select queries, and inverse-suffix-array queries are equivalent to prefix-special-rank queries. The reductions in both directions preserve all four standard measures up to constant factors: space, query time, preprocessing time, and preprocessing space. Unlike previous reductions, they incur no additive $O(\log\log n)$ query-time term. Thus, the corresponding prefix-query problems capture suffix-array and inverse-suffix-array access without asymptotic loss in any of the four measures.