Reverse Post Correspondence Problem and Undecidability of $5' \rightarrow 3'$ String Assembly Systems

Abstract

The Post Correspondence Problem is as follows: having a set of dominoes, is there any (maybe repeating) sequence of them such that the words formed by the upper parts and the lower parts by the sequence of dominoes are identical. It is one of the most known problems that is algorithmically undecidable. In this paper, the reverse Post Correspondence Problem is defined, that is, where the two assembled words of the dominos are reversals of each other. Undecidability about this new, modified problem is proven. Further, based on this result, it is also proven that the emptiness problem for 5'->3' String Assembly Systems is undecidable too. 5'->3' String Assembly Systems belong to String Assembly Systems type formal language generating models. The 5'->3' denotes that, in these variants, the derivations of the generated words start from the two extremes. The notation and the new model are bio-motivated as any double stranded DNA has two opposite oriented 5'->3' strands.