Reservoir: A Large-Scale Simulated Dataset for Training and Evaluating Epidemiological Models
Carson Dudley, Reiden Magdaleno, Marisa Eisenberg
Abstract
Large-scale, standardized datasets have driven many advances in AI-based scientific modeling, from protein structure prediction to natural language processing. Infectious disease epidemiology is increasingly adopting AI methods for forecasting, surveillance, and outbreak analytics, but the time-series data available to train them remains orders of magnitude smaller than the corpora behind the advances seen in other fields. Because the scope of real-world epidemiological data cannot practically reach the scale needed to train truly large-scale AI methods, simulated data provides a possible alternative. Here we introduce Reservoir, a large open simulator and dataset of realistic epidemic simulations in which every trajectory carries complete ground-truth labels, including quantities that cannot be measured directly in a real outbreak, such as true infection counts, time-varying reproduction numbers, and counterfactual intervention effects. Reservoir is generated by a stochastic simulator with realistic noise and reporting artifacts, together with interventions with configurable timing, compliance, and age-dependent efficacy. The current release contains 500,000 outbreak trajectories spanning one billion simulated days across diverse pathogen characteristics, population structures, and intervention regimes. Reservoir enables counterfactual experiments, surveillance-design studies, and training of epidemic models at a scale real-world datasets cannot provide.
Create a lesson
Related papers
What sets the critical genome length for sympatric speciation? A closed form and asymptotic theory
Dan Braha, Marcus A. M. de Aguiar, Vitor M. Marquioni
The emergence and evolution of a referential code in populations of bee-like agents
Grzegorz Chrupała
Tree Buckets and the Reconstruction of Pairs of Phylogenetic Trees
Sky Basire, Michael Hendriksen
Global geometry of the genotype-phenotype map illuminates a trade-off between penetrance and mutational adaptability
Yutaro Ikeda, Kunihiko Kaneko, Tetsuhiro S. Hatakeyama
The Informational Model of the Holobiont: Statistical Tests for Selection and Extension to a Theory of Variable Interactions
Antonio Carvajal-Rodríguez
Episode Clustering in Phylogenetic Networks
Paweł Górecki, Agnieszka Mykowiecka, Jarosław Paszek