Roles of stiffness and excluded volume in DNA denaturation
Enrico Carlon, Enzo Orlandini, Attilio L. Stella
Abstract
The nature and the universal properties of DNA thermal denaturation are investigated by Monte Carlo simulations. For suitable lattice models we determine the exponent c describing the decay of the probability distribution of denaturated loops of length l, P l-c. If excluded volume effects are fully taken into account, c= 2.10(4) is consistent with a first order transition. The stiffness of the double stranded chain has the effect of sharpening the transition, if it is continuous, but not of changing its order and the value of the exponent c, which is also robust with respect to inclusion of specific base-pair sequence heterogeneities.
Create a lesson
Related papers
Robust Golden Ratio universality as a consequence of a circulant symmetry
Luka Paljk, Johannes Schmidt, Vladislav Popkov
Replica Transition at Measurement-Altered Ising Criticality
Kabir Khanna, Sara Murciano, Romain Vasseur
Scalene Yang-Baxter triples realize all nearest-neighbour Hamiltonians with global additive symmetries
Pramod Padmanabhan, Somnath Maity, Akash Sinha et al.
Graph-theoretic framework for semi-Markov networks: transient and stationary occupation probabilities, hitting times and weak ergodicity breaking
Julian Voits
Spectral optimization of spherical lattices and applications to classical and quantum interacting spin systems
Jonas Völler, Grigorios Makris, Fabian Hassler et al.
Entropic-ordered superfluid
Isabella Zane, Andrew Lucas