On coarse-graining by the Inverse Monte Carlo method: Dissipative Particle Dynamics simulations made to a precise tool in soft matter modeling
A. P. Lyubartsev, M. Karttunen, I. Vattulainen, A. Laaksonen
Abstract
We present a promising coarse-graining strategy for linking micro- and mesoscales of soft matter systems. The approach is based on effective pairwise interaction potentials obtained from detailed atomistic molecular dynamics (MD) simulations, which are then used in coarse-grained dissipative particle dynamics (DPD) simulations. Here, the effective potentials were obtained by applying the Inverse Monte Carlo method [Lyubartsev and Laaksonen, Phys. Rev. E. vol. 52, 3730 (1995)] on a chosen subset of degrees of freedom described in terms of radial distribution functions. In our first application of the method, the effective potentials were used in DPD simulations of aqueous NaCl solutions. With the same computational effort we were able to simulate systems of one order of magnitude larger as compared to the MD simulations. The results from the MD and DPD simulations are found to be in excellent agreement.
Create a lesson
Related papers
Potential energy release rate for solids with bounded domains during evolutions involving changes to boundaries and boundary data
Mrityunjay Kothari, Sayaka Kochiyama, Haneesh Kesari
Arrested phase separation and amorphous patterns in charged binary fluids
Logan H. Grant, Ana Bensabat, Eva Pospivsilova et al.
Shear-driven arrest of dip-coating film entrainment
Theo Witkamp, Stéphane Zaleski, Federico Toschi
How Fluctuations Control Chiral Symmetry Breaking in Reacting Mixtures of Chiral Molecules
Leonardo Silva-Dias, Christoph A. Weber
A new device for live cell imaging of biological samples under in-plane shear
Sidharth Kumar Das, Lyova Mamoyan, Eberhard Bodenschatz et al.
Imbibition dynamics under dissolution-driven fluid thickening
H. W. Almeida, A. F. V. Matias, R. C. V. Coelho et al.