Generalized-Ensemble Algorithms: Enhanced Sampling Techniques for Monte Carlo and Molecular Dynamics Simulations
Y. Okamoto
Abstract
In complex systems with many degrees of freedom such as spin glass and biomolecular systems, conventional simulations in canonical ensemble suffer from the quasi-ergodicity problem. A simulation in generalized ensemble performs a random walk in potential energy space and overcomes this difficulty. From only one simulation run, one can obtain canonical-ensemble averages of physical quantities as functions of temperature by the single-histogram and/or multiple-histogram reweighting techniques. In this article we review the generalized-ensemble algorithms. Three well-known methods, namely, multicanonical algorithm, simulated tempering, and replica-exchange method, are described first. Both Monte Carlo and molecular dynamics versions of the algorithms are given. We then present five new generalized-ensemble algorithms which are extensions of the above methods.
Create a lesson
Related papers
Global Minima of the Thomson Problem in a Disk: A Molecular Dynamics Approach with Fixed Border Charges
Georgiy K. Lavrov, Eduard G. Nikonov
Martingale theory for heat and phase-space contraction in heterogeneous diffusions
Jing Qin, Nariya Uchida, Édgar Roldán
Formal Fluctuation-Response Relations for Non-Stationary Systems: The Dynamic Conjugate Variable
Igor M. Sokolov
Khinchin's ergodicity and typicality in statistical mechanics
Dario Lucente, Marco Baldovin, Giacomo Gradenigo et al.
Universal 1/f Noise in the Power Spectra of Energy Time-series in Solvated DNA Dynamics
Harsh Sahu, Deepika Sardana, Pramod Kumar et al.
Landau diamagnetism and the de Haas-van Alphen effect from a single geometric construction
Sung-Hoon Lee