Analyzing neural responses to natural signals: Maximally informative dimensions
Tatyana Sharpee, Nicole C. Rust, William Bialek
Abstract
We propose a method that allows for a rigorous statistical analysis of neural responses to natural stimuli which are non-Gaussian and exhibit strong correlations. We have in mind a model in which neurons are selective for a small number of stimulus dimensions out of a high dimensional stimulus space, but within this subspace the responses can be arbitrarily nonlinear. Existing analysis methods are based on correlation functions between stimuli and responses, but these methods are guaranteed to work only in the case of Gaussian stimulus ensembles. As an alternative to correlation functions, we maximize the mutual information between the neural responses and projections of the stimulus onto low dimensional subspaces. The procedure can be done iteratively by increasing the dimensionality of this subspace. Those dimensions that allow the recovery of all of the information between spikes and the full unprojected stimuli describe the relevant subspace. If the dimensionality of the relevant subspace indeed is small, it becomes feasible to map the neuron's input-output function even under fully natural stimulus conditions. These ideas are illustrated in simulations on model visual and auditory neurons responding to natural scenes and sounds, respectively.
Create a lesson
Related papers
Efficient Transport Networks through Edge Pruning by Relative Resistance
Mathieu Le Verge-Serandour, Viktor Vasilev, Lara Szeimies et al.
Boundary-contact repolarization provides a mechanism for directional guidance of neural crest cell collectives
Aditya Shankar Paspunurwar, Hector Gomez
Femtosecond Three-Dimensional Imaging of Single-Protein with Hard X-ray Laser
Paul Lourdu Xavier, Andrew J. Morgan, Johan Bielecki et al.
Three-dimensional imaging of isolated membrane-protein complexes in vacuo with an X-ray laser
Kartik Ayyer, Tej Varma Yenupuri, Johan Bielecki et al.
Polarization of the Drosophila oocyte by active cortical exchange
Mohammadhossein Firouznia, Wen Lu, Margot Lakonishok et al.
Inverse-Designed Anisotropic Intrastromal Corneal Exoskeletons for Keratoconus: A Three-Dimensional Computational Feasibility Study
J. Sumaya-Martinez, Alan Altamirano