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Single-ensemble nonequilibrium path-sampling estimates of free energy differences

F. Marty Ytreberg, Daniel M. Zuckerman

physics.comp-pharXiv:physics/0403093

Abstract

We introduce a straightforward, single-ensemble, path sampling approach to calculate free energy differences based on Jarzynski's relation. For a two-dimensional ``toy'' test system, the new (minimally optimized) method performs roughly one hundred times faster than either optimized ``traditional'' Jarzynski calculations or conventional thermodynamic integration. The simplicity of the underlying formalism suggests the approach will find broad applicability in molecular systems.

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