Solvable Lattice Gas Models of Random Heteropolymers at Finite Density: II. Dynamics and Transitions to Compact States
H. Chakravorty, J. van Mourik, A. C. C. Coolen
Abstract
In this paper we analyse both the dynamics and the high density physics of the infinite dimensional lattice gas model for random heteropolymers recently introduced in jort. Restricting ourselves to site-disordered heteropolymers, we derive exact closed deterministic evolution equations for a suitable set of dynamic order parameters (in the thermodynamic limit), and use these to study the dynamics of the system for different choices of the monomer polarity parameters. We also study the equilibrium properties of the system in the high density limit, which leads to a phase diagram exhibiting transitions between swollen states, compact states, and regions with partial compactification. Our results find excellent verification in numerical simulations, and have a natural and appealing interpretation in terms of real heteropolymers.
Create a lesson
Related papers
The Stone-Wales trefoil: a new topological defect in graphene
M. V. Kondrin, Y. B. Lebed, V. V. Brazhkin
Short-Range Vector Spin Glasses: Parisi Hierarchies and Real-Space Ultrametricity
Akash Vijay, Jaewon Kim, Jong Yeon Lee
Lyapunov spectrum of random neural networks
David G. Clark
Revealing more on complex energy landscapes by passing less local information: Cavity approach with trust region in non-convex optimization problems
Zhiqi Xu, Chi Ho Yeung
Predicting activation-barrier and plasticity-onset statistics in a model of glasses
Makoto Suda, Edan Lerner, Eran Bouchbinder
Classifications in modular restricted Boltzmann machines
Elena Agliari, Andrea Lepre, Edoardo Roscani